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序号
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论文信息
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1.
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Luo N, Huang Q, Zhang ML, Yi CQ.(2025)
Functions and therapeutic applications of pseudouridylation. Nat. Rev. Mol.
Cell Biol., 26: 691-705.
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2.
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Liu Y, Liu YS, Niu XR, Chen A, Li YZ, Yu Y, Mo BR,
Liu ZH, Xu T, Cheng J, Wu ZG, Wei WS.(2025) Massively parallel
interrogation of human functional variants modulating cancer
immunosurveillance. Signal Transduct. Target. Ther., 10: 88.
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3.
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Zhang XX, Zhang X, Ren JW, Li JY, Wei XX, Yu Y, Yi
ZY, Wei WS.(2025) Precise modelling of mitochondrial diseases
using optimized mitoBEs. Nature, 639: 735-745.
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4.
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Liu JL, Yan XQ, Wu H, Ji ZQ, Shan Y, Wang XY, Ran
YF, Ma YC, Li CT, Zhu YC, Gu RC, Wen H, Yi CQ, Chen PR.(2025)RNA codon expansion via programmable pseudouridine
editing and decoding. Nature, 643: 1410-1420.
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5.
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Liu M, Yue Y, Chen X, Xian K, Dong C, Shi
M, Xiong H, Tian K, Li Y, Zhang QC, He AB. (2025) Genome-coverage single-cell
histone modifications for embryo lineage tracing. Nature, 640: 828-839.
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6.
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Hu
JZ. (2025) A tale of two forms of cohesin in DNA repair.Science,390: 987-988.
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7.
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Dai R, Zhang JY, Liu F, Xu HR, Qian JM, Cheskis S,
Liu WD, Wang BL, Zhu HH, Pronk LJU, Medema MH, de Jonge R, Pieterse CMJ, Levy
A, Schlaeppi K, Bai Y. (2025) Crop root bacterial and viral genomes reveal
unexplored species and microbiome patterns.Cell, 188: 2521-2539.
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8.
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Liu P, Quan X, Song ZH, Li WH, Wang Y, Gu HY, Xie DX,
Yang WC, Dresselhaus T, Zhong S, Qu L.-J. (2025) A two-step self-pollination
mechanism maximizes fertility in Brassicaceae. Cell, 188: 2845-2855.
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9.
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Zhang JY, Wang B, Xu HR, Liu WD, Yu JW, Wang QX, Yu
H, Wei JW, Dai R, Zhou JH, He YH, Zou D, Yang JH, Ban XW, Hu QL, Meng XB, Liu
YX, Wang BL, Hu B, Wang MY, Xin PY, Chu JF, Li CS, Garrido-Oter R, Yu P, Dijk
ADJV, Dong LM, Bouwmeester H, Gao S, Huang AC, Chu CC, Li JY, Bai Y. (2025)
Root microbiota regulates tiller number in rice.Cell, 188: 3152-3166.
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10.
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Dhungel BP, Xu H, Nagarajah R, Vitale J, Wong ACH,
Gokal D, Feng Y, Tabar MS, Metierre C, Parsania C, Song XH, Wang GP, Su XD,
Bailey CG, Rasko JEJ.(2025) An alternate receptor for adeno-associated
viruses. Cell, 188: 4924-4935.
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11.
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Wu ZH,Shi JH,Lamao QZ,Qiu YY,Yang JX,Liu Y,Liang FF,Sun X,Tang W,Chen CY,Yang QM,Wang CM,Li ZF,Zhang HX,Yang ZH,Zhang YY,Yi YY,Zheng XF,Sun Y,Ma KY,Yu LL,Yang HH,Wang ZX,Zheng WJ,Yang L,Zhang ZX,Zhang YJ,Wu ZQ,Wang Y,Wong C C.L,Jin M,Yuan PF,HanWD,Wei WS.(2025)Glycan shielding enables TCR-sufficient allogeneic CAR-T therapy. Cell,
188: 6317-6334.
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12.
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Bai DS, Zhang XT, Xiang HF, Guo ZJ, Zhu CX, Yi CQ.(2025)Simultaneous single-cell analysis of 5mC and 5hmC with SIMPLE-seq. Nat.
Biotechnol., 43: 85-96.
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13.
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Luo N, Huang Q, Dong LT, Liu WQ, Song JH, Sun HX,
Wu H, Gao Y, Yi CQ.(2025)
Near-cognate tRNAs increase the efficiency and precision of
pseudouridine-mediated readthrough of premature termination codons. Nat.
Biotechnol., 43: 114-123.
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14.
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Lan TL, Chen LG, Wang Y, Jiao YL. (2025) Genome
synthesis in plants. Nat. Rev. Bioeng., 3: 875-889.
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15.
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Sun HX, Lu B, Zhang
ZY, Xiao Y, Zhou Z, Xi L, Li ZC, Jiang Z, Zhang JY, Wang M, Liu C, Ma YC,
Peng JY, Wang XJ, Yi CQ.(2025)Mild and
ultrafast GLORI enables absolute quantification of m6A methylome
from low-input samples. Nat. Methods,22: 1226-1236.
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16.
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Cheng QX, Xie G, Zhang XY, Wang J, Ding SJ, Wu YX, Shi M, Duan FF, Wan
ZL, Wei JJ, Xiao JY, Wang YM.(2025)
Co-profiling of in situ RNA-protein interactions and transcriptome in single
cells and tissues. Nat. Methods.,22: 1824-1835.
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17.
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Xiang BL, Zhang ML, Li K, Zhang ZJ, Liu YT, Gao ML,
Wang XY, Xiao XL, Sun YS, He C, Shi J, Fan HZ, Xing XX, Xu GS, Yao YM, Chen
G, Zhu HC, Yi CQ, Zhang JF.(2025) The epitranscriptional factor PCIF1
orchestrates CD8+ T cell ferroptosis and activation to control antitumor
immunity.Nat. Immunol., 26: 252-264.
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18.
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Zhong S, Lan Z, Qu
L.-J.(2025)
Ingenious
male–female communication ensures successful double fertilization in
Angiosperms. Annu. Rev. Plant Biol., 76: 401-431.
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19.
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Zhang M, Wang YQ, Cai NN, Qu YY, Ma XQ, Xue J, Chen
XR, Zhang XG, Xiao JY, Zhang YH.(2025) Structures of butyrophilin multimers reveal a
plier-like mechanism for Vγ9Vδ2 T cell receptor activation. Immunity, 58:
1660-1669.
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20.
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Ma J, Wu FD, Xu TY, Xu SY, Liu W, Yan L, Qu MH,
Yang XK, Bai QF, Xiao JY, Yao JH.(2025) An adaptive autoregressive diffusion approach
to design active humanized antibodies and nanobodies. Nat. Mach. Intell., 7:
1698-1712.
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21.
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Ren HW, Tang YW, Zhang D. (2025) The emerging role of
protein l-lactylation in metabolic regulation and cell signaling. Nat. Metab.,
7: 647-664.
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22.
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Bi YP, Yu LS, Deng QD, Kong LH,
Guo FH, Zhang YC, Wang RX, Chen PR, Liu J, Fan XY.(2025)
Photocatalytic labelling-enabled subcellular-resolved RNA profiling and
synchronous multi-omics investigation. Nat. Chem.,17: 1871-1882.
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23.
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Zhu XH, Chang ZH, Xiao WD, Zhang XB, Ma ML, Wu J, Hu JD, Bi Y, Kou XC,
Zhao YH, Sheng YF, Dong BX, Sun JX, Chen C, Wu Y, Liu XL, Ding WQ, Jia KY, Yao
YF, Sun LH, Yu XB, Wnag H, Liu J, Wnag YX, Gao SR, Gao YW.(2025)N6-methyladenosine on L1PAgoverns thetrans-silencing of LTRs andrestrains totipotency innaïvehumanembryonicstemcells. Cell Stem Cell,32:1773-1791.
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24.
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Liang S, Kang YJ, Huo MR, Yang DC, Ling M, Yue KL,
Wang Y, Xu LP, Zhang XH, Xia CR, Li JY, Wu N, Liu RY, Dong XY, Liu JY, Gao G,
Huang XJ.(2025) Systematic mining and quantification reveal the
dominant contribution of non-HLA variations to acute graft-versus-host
disease.Cell. Mol. Immunol., 22:
501-511.
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25.
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Liu SY, Shan XQ, Sun YF, Chen HX, Feng HZ, Mo SC,
Bao CL, Zhu JQ, Zhang ZZ, Wei F, Bai XZ, Xu R, Lai JX, Luo HY, Zhang CT, Luo
XY, Jiang Q, Chen YQ, Zhou YQ, Tang HY, Xu L, Lu WJ, Guo R, Liu CL, Yang ZF,
Yuan JXJ, Xu XL, Xu DY, Wang J, Yang K. (2025) Deficient FANCL predisposes to
endothelial damage a new therapeutic target for pulmonary hypertension. Am.
J. Respir. Crit. Care Med., 211: 1474-1491.
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26.
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Xu J, Zhang W. (2025) From fossils to genomes: decoding
the insect world. Natl. Sci. Rev., 12: nwaf055.
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27.
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Li Y, Zhu JQ, Li Q, Hong H, Li T, Jia HN, Hou BX,
Lu HZ, Li YZ, Xie J, Wang FC, Ye H, Liu KH, Lu AH, Zhao JD.(2025)
Non-linear frequency-doubling up-conversion in sulfide minerals enables
deep-sea oxygenic photosynthesis. Natl. Sci. Rev., 12: nwaf219.
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28.
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Li Y, Zhu JQ, Li Q, Hong H, Li T, Jia HN, Hou BX,
Lu HZ, Li YZ, Xie J, Wang FC, Ye H, Liu KH, Lu AH, Zhao JD.(2025)
Sulfide mineral-driven photon upconversion sustains phototrophic
cyanobacteria at deep-sea hydrothermal vents: a reply to mullineaux and
duffy's chemolithoautotrophic hypothesis. Natl. Sci. Rev., 12: nwaf292.
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29.
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Liu Y, Zhangding Z, Liu XH, Hu JZ.(2025)
Chromatin-centric insights into DNA replication. Trends Genet., 41: 412-424.
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30.
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He B, Fan Y, Liu JZ, Chen YT, Yang JM, Xiang HF,
Peng JY, Yi CQ.(2025) Advancing DNA and RNA modification detection via
nanopore sequencing. ACS Nano, 9: 37468-37483.
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31.
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Yin HJ, Liu Y, Zhao Y, Chen PY, Chang ZY. (2025) A FtsZ
cis disassembly element acts in Z-ring assembly during bacterial cell
division. Nat. Commun., 16: 5194.
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32.
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Fan D, Hu W, Xu N, Seto ER, Lagarias JC, Chen XM,
Chen M. (2025) A multisensor high-temperature signaling framework for
triggering daytime thermomorphogenesis in Arabidopsis. Nat. Commun., 16:
5197.
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33.
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Xia CR, Cao ZJ, Gao G. (2025) DECIPHER for learning
disentangled cellular embeddings in large-scale heterogeneous spatial omics
data. Nat. Commun., 16: 7991.
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34.
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Zheng HN, Xu QQ, Ji DX, Yang BQ, Ji X. (2025) CTDP1
and RPB7 stabilize Pol II and permit reinitiation. Nat. Commun., 16: 2161.
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35.
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Xu H, Song XH, Su XD. (2025) Calcium-dependent
oligomerization of scavenger receptor CD163 facilitates the endocytosis of
ligands. Nat. Commun., 16: 6679.
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36.
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Shen Y, Li BH, Dong L, Tang W, Ren JW, Chen F,
Zheng WJ, Yu Y, Gao L, Wei WS.(2025) Self-splicing RNA circularization facilitated
by intact group I and II introns. Nat. Commun., 16: 7376.
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37.
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Zhang ZY, Zhang HW, Zheng LQ, Chen SH, Du S, Xiao
JY, Patel DJ.(2025) CXCR4 mediated recognition of HIV envelope spike
and inhibition by CXCL12. Nat. Commun., 16: 8653.
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38.
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Bei YC, Wang SJ, Wang R, Ahmad O, Jia M, Yao PJ, Ji
JG, Shen PP.(2025) CDK5-triggered G6PD phosphorylation at threonine
91 facilitating redox homeostasis reveals a vulnerability in breast cancer. Acta
Pharm. Sin. B, 15: 1608-1625.
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39.
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Pei XJ, Zhao D, Luo J, Jia PY, Luo Y, Yuan DW, Hou
WX, Zhang ZF, Huang DY, Ni JX, Gao HZ, Chen ZQ, Luan YX, Chen XX, Zhang W, Li
S. (2025) The pigment transporter Redboy confers programmed body colour
transition in orchid mantises.Nat. Ecol. Evol., 9: 1120-1137.
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40.
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Chen H, Xu YP, Ge H, Su XD.(2025) DNA-protein binding is dominated by short
anchoring elements. Adv. Sci., 12: e2414823.
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41.
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Luo LX, Yang MQ, Song ZH, Liu YL, Xiao SX, Wang DY,
Calonje M, He H, Zhou Y. (2025)PRC1-mediated H2Aub loop formation and function in
Arabidopsis. Adv. Sci., 12: e04377.
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42.
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Zhang D, Gao JJ, Zhu ZJ, Mao QY, Xu ZQ, Singh PK,
Rimayi CC, Moreno-Yruela C, Xu SL, Li GY, Sin YC, Chen Y, Olsen CA, Snyder
NW, Dai LZ, Li LJ, Zhao YM.(2025) Lysine l-lactylation is the
dominant lactylation isomer induced by glycolysis. Nat. Chem. Biol.,21: 91-99.
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43.
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Li YZ, Xu T, Ma HZ,
Yue D, Lamao Q, Liu Y, Zhou Z, Wei WS.(2025)Functional profiling of serine, threonine and tyrosine sites. Nat. Chem.
Biol.,21: 532-543.
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44.
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Liu MT, Xu QQ, Wang H, Ji X. (2025) INO80/SWR
remodelers regulate Pol II transcription through BRD2 and chromatin
landscape. Nucleic Acids Res., 53: gkaf892.
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45.
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Liu JY, Bai XZ, Chen XP, Li BH, Zhao
HY, Wu JH, Ye YL, Yu JY, Yan ZX, Guo R, Xu DY, Li W. (2025) A nucleoskeleton network
preserves genomic integrity by promoting NHEJ and restraining chromosome
translocations. Nucleic Acids Res., 53: gkaf1354.
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46.
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XuMP, Liu XY, Wang M, Luo TT, Gao YW, Liu J, Shi JJ.(2025)
BASAL: a universal mapping algorithm for nucleotide base-conversion
sequencing.Nucleic Acids Res.,53:gkae1201.
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47.
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Song MF, Wang YQ, Ma T, Terzaghi W, HeK, Wang HJ, Xu B,JingYJ,Lin RC,DengXW, Zhu DM,
Wang YQ. (2025) PKL modulates H3K4me2/me3 modification and spatial gene
congregation in chromatin regulation.Nucleic Acids Res.,53:gkaf1376.
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48.
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Liu XQ, Zhang B,
Hua Y, Li XZ, Kong DC.(2025) Nucleosomes
represent a crucial target for the intra-S phase checkpoint in response to
replication stress. Sci. Adv., 11: eadr3673.
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49.
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Chen JH, Liu CL, Li WX, Clark AG, Wang ZJ, Lu J. (2025)
Pervasive sex-dependent effects in the genetic architecture of starvation
resistance in Drosophila melanogaster.Sci.
Adv., 11: eadt3560.
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50.
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Shao CY, Li MY, Liu LY, Bai DS, Yang JM, Liu C, Cai
LX, Wang XY, Peng JY, Guo ZJ, Yi CQ.(2025) Pt-seq unveils the
genomic binding pattern of platinum-based drugs.Sci.
Adv., 11:eadx6809.
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51.
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Zhang RX, Ji CG, Li SH, Li NN, Gao N, Xiao JY.(2025)XenopusIgX informs engineering strategies of IgM and IgG
hexamers. Sci. Adv., 11: eaea3737.
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52.
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Zhu JY, Bao LJ, Xu SC, Ji X. (2025) FeaSion decodes the
regulatory landscape and functional diversity of RNA polymerase II CTD
phosphorylation.Sci. Adv., 11: eadz2345.
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53.
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Tang XL, Ma T, Yao ZC, Zhang L, Qian ZH, Song R, Lu J.
(2025) The triumvirate of mutation bias, population dynamics, and natural
selection in shaping SARS-CoV-2 intra-host variation.J. Infect., 91: 106628.
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54.
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Li J, Le B, Wang XF, Xu Y, Wang SK, Li H, Gao L, Mo BX, Liu L, Chen XM.
(2025) ALTERED MERISTEM PROGRAM1 impairs RNA silencing by repressing the
biogenesis of a subset of inverted repeat-derived siRNAs. Plant Cell, 37:
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55.
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TaoJY, KongWW, LuoWG, WangL, DaiX, LinXJ, DongHJ, YangXY, MoBX, ChenXM, Yu Y. (2025).The rice microRNA159-SPOROCYTELESSEAR2 module regulates starch
biosynthesis during pollen development and maintains male fertility. Plant
Cell, 37:koae324.
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56.
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Liu CH, Li A, Guo ZL, Chen NC, Wang Y, Tang WX, Wu
YX, Liu JY, Wang ZH, Li L, He XQ.(2025) MicroRNA analysis reveals 2 modules that
antagonistically regulate xylem tracheary element development in Arabidopsis.
Plant Cell, 37: koaf011.
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57.
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Zhang YF, Huang RZ, Yang TT, Li A, Wang ZH, Wu YX, Deng
Y, Zhang J, He XQ, Zhou Y. (2025) PRC2 regulates cytokinin and HD-ZIP III
pathways to orchestrate vascular tissue pattern formation in Arabidopsis. Plant
Cell, 37: koaf194.
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58.
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Wei B, Liu YK, Lyu M, Chen R, Ma J, Yin CB, Huang
J, Peng LX, Fu Z, Song QL, Lu F, Zhang XQ, Jiao YL.(2025) Natural variation inCHELATASE SUBUNIT I-Aincreases grain
weight and enhances wheat yield. Plant Cell, 37: koaf212.
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59.
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Mi L, Li YX, Lv XC, Wan ZL, Liu X, Zhang KR, Li HC, Yao Y, Zhang LP, Xu
Z, Zhuang XY, Ji KQ, Jiang M, Wang YM, Lu PL.(2025) Computational design of a high-precision
mitochondrial DNA cytosine base editor. Nat. Struct. Mol. Biol., 32:
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60.
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Zhao JD, Weng YX, Zheng ZG.(2025)
The structure and mechanism of energy transfer in phycobilisomes. Annu. Rev.
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Gong WX, Yang JH, Yi CQ, Yang YG, Han DL. (2025) RNA
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63.
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Song ZH,Xia QM,Yang MQ,Yang TT,Liu YL,Wang DY,Shu JY , Liu ZY,Chi Y,Xu HM,Xing D,Zhou Y. (2025) Dynamic
changes in 3D chromatin structure during male gametogenesis inArabidopsis
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64.
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Ci D, Liu Y, Wang LS, Zhu RX, Chen Y, Bai G, Xu ZY,
Zhou HB, Zhou XP, Fan LM, Qian WQ.(2025) ALBA3 maintains male fertility under heat
stress in plants.J. Integr. Plant Biol., 67:
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Guo CK, Xia CR, Peng GD, Cao ZJ, Gao G. (2025) Learning
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Hui TX, Zhou
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Lu XY, Zhang QY,
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69.
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Wang YT, Cao Y, Qin GJ. (2025)Multifaceted roles of TCP transcription factors in fate determination.New
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Chang GX, Xiang FY, Fan YX, Li J, Zhong SW. (2025)
Light signal transduction in plants: insights from phytochrome nuclear
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71.
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Qian JM, Li KP, Liu WD, Zhang JY, Wylie A, Arnall
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Chitooligosaccharide receptors modulate root microbiota to enhance symbiosis
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Lan ZJ, Zhong S, Qu L.-J. (2025) Plant reproduction:
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Li D, Hu CQ, Su JW, Du S, Zhang Y, Ni WQ, Ren L,
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Xiao SX, Luo LX, Yang MQ, He H, Zhou Y. (2025)CFine-scale 3D chromatin architectures and their regulatory mechanisms
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75.
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He YT, Xu L, Liu QK. (2025) The
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76.
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Sun YQ, Shui K, Li QY, Liu CL,
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Upstream open reading frames dynamically modulate CLOCK protein translation
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77.
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Shi XX,
Liu K, Tian YC, Bi XY, Zhang JK, Ma FY, Wei WS, Zhao TB.(2025) Huaier suppresses lung cancer by
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Bai DS, Yang JM, Xue XH, Gao Y, Wang Y, Cui MG, He
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Single-cell 5-hydroxymethylcytosine landscapes of mouse early embryos at
single-base resolution. Cell Rep., 44: 115520.
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79.
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Wei PJ, Li XY, Zhang K, Zhao XA, Dong CX, Zhao JD.(2025)
Loss of the cytochrome b6f subunit PetN destabilizes the complex
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80.
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Lin RY, Yan ZL, Yao M. (2025) Robust passive sampling
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81.
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Chen XY, Yan ZL, Li S, Yao M. (2025) Advancing aquatic
biodiversity assessments of invertebrates using eDNA metabarcoding: A
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82.
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Gao MJ, Hu WY, Meng DL, Yao PJ, Yang SQ, Tong YP,
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83.
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Liu MZ, McShea WJ, Hua FY,
Guan TP, Wang DJ, Shen XL, Li S. (2025) Effects of protected areas on
human-induced shifts in nocturnal activity in mammal communities in southwest
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84.
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Fu YF, Qu H, Qu DC, Zhao M. (2025) Trajectory Inference
with Cell-Cell Interactions (TICCI): intercellular communication improves the
accuracy of trajectory inference methods. Bioinformatics, 41: btaf027.
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85.
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Han Y, Zhao ZH, Stanton DWG, Lei XL, Wu Z, Liu YT,
Yu C, Chen X, Li WY, Wang J, You Y, Li Y, Lei S, Yi HL, Fan WQ, Cai QF, Min
R, Hu CC, Chen CP, Cui YJ, Guo JQ, Zhang HL, Song HC, Guo X, Ruan QR, Tan YH,
Li ZY, Zhang XY, Shi XY, Zhou X, Zhuang Y, Manin A, Frantz LAF, Alves JM, Pan
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86.
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Zhang T, Tian RR, Li FY, Tang XL, He
WB, Hao ZP, Zhuo L, Lu J, Lu XM, Zheng YT.(2025)
Convergent evolution and host-limiting impacts of SARS-CoV-2 revealed by
cellular experiments. Mol. Biol. Evol., 42: msaf274.
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87.
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Wang SZ, Kou ZQ, Jiang YG, Tomberlin JK, Zhang W,
Wang ST, Huang YP.(2025) Truncated Higiant enhances the bioconversion
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88.
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Luo LX, Yang MQ, Zhou Y. (2025) BMI1s interact
with condensin complexes to regulate chromatin 3D structure and gene
expression inArabidopsis. aBIOTECH,
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89.
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Hu XY, Lu WX, Wang ZZ, Rao GY.(2025)
Hybridization ddRAD-sequencing and phenotypic analysis clarify the
phylogeographic structure and evolution of an alpineChrysanthemumspecies with a sky island distribution. Front.
Plant Sci., 16: 1563127.
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