序号

论文信息

1.

Li FG, Fan GY, Lu CR, Xiao GH, Zou CS, Kohel RJ, Ma ZY, Shang HH, Ma XF, Wu JY, Liang XM, Huang G, Percy RG, Liu K, Yang WH, Chen WB, Du XM, Shi CC, Yuan YL, Ye WW, Liu X, Zhang XY, Liu WQ, Wei HL, Wei SJ, Huang GD, Zhang XL, Zhu SJ, Zhang H, Sun FM, Wang XF, Liang J, Wang JH, He Q, Huang LH, Wang J, Cui JJ, Song GL, Wang KB, Xu X, Yu JZ, Zhu YX, Yu SX. (2015) Genome sequence of cultivated Upland cotton (Gossypiumhirsutum TM-1) provides insights into genome evolution. Nat Biotechnol., 33: 524-530.

2.

Zhang XY, Zhu Y, Liu XD, Hong XY, Xu Y, Zhu P, Shen Y, Wu HH, Ji YS, Wen X, Zhang C, Zhao Q, Wang YC, Lu J, Guo HW. (2015) Suppression of endogenous gene silencing by bidirectional cytoplasmic RNA decay in Arabidopsis. Science, 348: 120-123.

3.

4.

Xia B, Han D, Lu X, Sun Z, Zhou A, Yin Q, Zeng H, Liu M, Jiang X, Xie W, He C, Yi CQ (2015) Bisulfite-free, base-resolution analysis of 5-formylcytosine at the genome scale.Nat Methods., 12: 1047-1050.

5.

Wang XJ, Cao Q, Zhang Y, Su XD. (2015) Activation and regulation of caspase-6 and its role in neurodegenerative diseases. Annu Rev PharmacolToxicol., 55: 553-572.

6.

Zhao HQ, Zhang P, Gao H, He XD, Dou YM, Huang AY, Liu XM, Ye AY, Dong MQ, Wei LP. (2015) Profiling the RNA editomes of wild-type C. elegans and ADAR mutants. Genome Res., 25: 66-75.

7.

Li XY, Zhu P, Ma SQ, Song JH, Bai JY, Sun FF, Yi CQ. (2015) Chemical pulldown reveals dynamic pseudouridylation of the mammalian transcriptome.Nat Chem Biol., 11: 592-597.

8.

Chang LF, Liu XW, Li YB, Liu CC, Yang F, Zhao JD, Sui SF. (2015) Structural organization of an intact phycobilisome and its association with photosystem II. Cell Res., 25: 726-737.

9.

Gao J, Tao JL, Liang WL, Zhao M, Du XX, Cui S, Duan HF, Kan BA, Su XD, Jiang ZF. (2015) Identification and characterization of phosphodiesterases that specifically degrade 3 ' 3 '-cyclic GMP-AMP. Cell Res., 25: 539-550.

10.

Yuan PF, Zhang HM, Cai CZ, Zhu SY, Zhou YX, Yang XZ, He RN, Li C, Guo SJ, Li S, Huang TX, Perez-Cordon G, Feng HP, Wei WS. (2015) Chondroitin sulfate proteoglycan 4 functions as the cellular receptor for Clostridium difficile toxin B. Cell Res., 25: 157-168.

11.

Wei BY, Zhang JZ, Pang CX, Yu H, Guo DS, Jiang H, Ding MX, Chen ZY, Tao Q, Gu HY, Qu LJ, Qin GJ. (2015) The molecular mechanism of SPOROCYTELESS/NOZZLE in controlling Arabidopsis ovule development. Cell Res., 25: 121-134.

12.

He RN, Peng JY, Yuan PF, Xu F, Wei WS. (2015) Divergent roles of BECN1 in LC3 lipidation and autophagosomal function. Autophagy., 11: 740-747.

13.

Yang L, Li BS, Zheng XY, Li JG, Yang M, Dong XN, He GM, An CC, Deng XW. (2015) Salicylic acid biosynthesis is enhanced and contributes to increased biotrophic pathogen resistance in Arabidopsis hybrids. Nat Commun., 6: 7309.

14.

Xing MT, Yang MR, Huo W, Feng F, Wei LZ, Jiang WX, Ning SK, Yan ZX, Li W, Wang QS, Hou M, Dong CX, Guo R, Gao G, Ji JG, Zha S, Lan L, Liang HH, Xu DY. (2015) Interactome analysis identifies a new paralogue of XRCC4 in non-homologous end joining DNA repair pathway. Nat Commun., 6: 6233.

15.

Zhang YZ, Jiao Y, Liu ZH, Zhu YX. (2015) ROW1 maintains quiescent centre identity by confining WOX5 expression to specific cells. Nat Commun., 6: 6003.

16.

Shi H, Wang X, Mo XR, Tang C, Zhong SW, Deng XW. (2015) Arabidopsis DET1 degrades HFR1 but stabilizes PIF1 to precisely regulate seed germination. ProcNatlAcadSci U S A., 112: 3817-3822.

17.

Guo D, Zhang J, Wang X, Han X, Wei B, Wang J, Li B, Yu H, Huang Q, Gu H, Qu L-J, Qin GJ(2015) The WRKY transcription factor WRKY71/EXB1 controls shoot branching by transcriptionally regulating RAX genes in Arabidopsis. Plant Cell, 27: 3112-3127.

18.

Lin Q, Ogashi Y, Kato M, Tsuge T, Gu H, Qu LJ, Aoyama T. (2015) GLABRA2 targets basic Helix-loop-helix transcription factor genes to robustly suppress root hair development. Plant Cell, 27: 2894-2906.

19.

Wu JG, Yang ZR, Wang Y, Zheng LJ, Ye RQ, Ji YH, Zhao SS, Ji SY, Liu RF, Xu L, Zheng H, Zhou YJ, Zhang X, Cao XF, Xie LH, Wu ZJ, Qi YJ, Li Y. (2015) Viral-Inducible argonaute18 confers broad-spectrum virus resistance in rice by sequestering a host microRNA. Elife., 4:e05733. DOI: 10.7554/eLife.05733.

20.

Jin JP, He K, Tang X, Li Z, Lv L, Zhao Y, Luo JC, Gao G. (2015) An Arabidopsis transcriptional regulatory map reveals distinct functional and evolutionary features of novel transcription factors. MolBiolEvol., 32: 1767-1773.

21.

Li Q, Wang XK, Sun H, Zeng J, Cao ZD, Li Y, Qian WQ. (2015) Regulation of active DNA demethylation by a methyl-CpG-binding domain protein in Arabidopsis thaliana.PLoS Genet., 11: e1005210.

22.

Xu D, Lin F, Jiang Y, Ling J, HettiarachchiC,Tellgren-RothC, Holm M, Wei N, Deng XW. (2015) Arabidopsis COP1 SUPPRESSOR 2 represses COP1 E3 ubiquitin ligase activity through their coiled-coil domains association.PLoS Genet., 11: e1005747.

23.

Li DX, Chen WQ, Xu ZH, Bai SN. (2015) HISTONE DEACETYLASE6-Defective mutants show increased expression and acetylation of ENHANCER OF TRIPTYCHON AND CAPRICE1 and GLABRA2 with small but significant effects on root epidermis cellular pattern. Plant Physiol., 168: 1448-1458.

24.

Qu LL, Ji YP, Zhu X, Zheng XF. (2015) hcinap negatively regulates Nf-κb signaling by recruiting the phosphatase PP1 to deactivate the IKK complex. J Mol Cell Biol., 7: 529-542.

25.

Ren XQ, Bai X, Zhang XF, Li ZY, Tang LF, Zhao XY, Li ZY, Ren YF, Wei SC, Wang QS, Liu C,Ji JG. (2015) Quantitative nuclear proteomics identifies that miR-137-mediated EZH2 reduction regulates resveratrol-induced apoptosis of neuroblastoma cells. Mol Cell Proteomics., 14: 316-328.

26.

Chen R, Shen LP, Wang DH, Wang FG, Zeng HY, Chen ZS, Peng YB, Lin YN, Tang X, Deng MH, Yao N, Luo JC, Xu ZH,Bai SN. (2015) A gene expression profiling of early rice stamen development that reveals inhibition of photosynthetic genes by OsMADS58. MolPlant., 8: 1069-1089.

27.

Huang H, Yang M, Su YE, Qu LJ, Deng XW. (2015) Arabidopsis atypical kinases ABC1K1 and ABC1K3 act opositely to cope with photodamage under red light. MolPlant., 8: 1122-1124.

28.

Liu GJ, Xiao GH, Liu NJ, Liu D, Chen PS, Qin YM, Zhu YX. (2015) Targeted lipidomics studies reveal that linolenic acid promotes cotton fiber elongation by activating phosphatidylinositol and phosphatidylinositol monophosphate biosynthesis. MolPlant., 8: 911-921.

29.

Li KL, Gao ZX, He H, Terzaghi W, Fan LM, Deng XW, Chen HD. (2015) Arabidopsis DET1 represses photomorphogenesis in part by negatively regulating DELLA protein abundance in darkness. MolPlant., 8: 622-630.

30.

Luo JC. (2014) Teaching the ABCs of bioinformatics: a brief introduction to the applied bioinformatics course. BriefBioinform.,15: 1004-1013.

31.

Zhao M, Li Z, Qu H. (2015) An evidence-based knowledgebase of metastasis suppressors to identify key pathways relevant to cancer metastasis. Sci Rep., 5: 15478.

32.

Liu JF, Fu XM, Chang ZY. (2015) Hypoionic shock treatment enables aminoglycosides antibiotics to eradicate bacterial persisters. Sci Rep., 5: 14247.

33.

Hong W, Qian D, Sun RH, Jiang L, Wang Y, Wei CH, Zhang ZK, Li Y. (2015) OsRDR6 plays role in host defense against double-stranded RNA virus, rice dwarf phytoreovirus. Sci Rep., 5: 11324.

34.

Zhao M, Kong L, Liu YN,Qu H. (2015) dbEMT: an epithelial-mesenchymal transition associated gene resource. Sci Rep., 5: 11459.

35.

Zhao M, Ma L, Liu Yn,Qu H. (2015) Pedican: an online gene resource for pediatric cancers with literature evidence. Sci Rep., 5: 11435.

36.

Ren QP, Li C, Yuan PF, Cai CZ, Zhang LQ, Luo GXG, Wei WS. (2015) A dual-reporter system for real-time monitoring and high-throughput CRISPR/Cas9 library screening of the hepatitis C virus. Sci Rep., 5: 8865.

37.

Zhang KM, Ezemaduka AN, Wang Z, Hu HL, Shi XD, Liui C, Lu XP, Fu XM, Chang ZY, Yin CC. (2015) A novel mechanism for small heat shock proteins to function as molecular chaperones. Sci Rep., 5: 8811.

38

39.

Qu LJ, Li L, Lan ZJ, Dresselhaus T. (2015) Peptide signalling during the pollen tube journey and double fertilization. J Exp Bot., 66: 5139-5150.

40.

Zhang X, Wu Q, Cui S, Ren J, Qian WQ, Yang Y, He SP, Chu JF, Sun XH, Yan CY, Yu XC, An CC. (2015) Hijacking of the jasmonate pathway by the mycotoxinfumonisin B1 (FB1) to initiate programmed cell death in Arabidopsis is modulated by RGLG3 and RGLG4. J Exp Bot., 66: 2709-2721.

41.

Xu XJ, Yang XX, Wu QX, Liu AJ, Yang XL, Ye AY, Huang AY, Li JR, Wang M, Yu Z, Wang S, Zhang ZC, Wu XR, Wei LP, Zhang YH. (2015) Ampliconresequencing identified parental mosaicism for approximately 10% of "de novo" SCN1A mutations in children with dravet syndrome. Hum Mutat., 36: 861-872.

42.

Hu B, Jin JP, Guo AY, Zhang H, Luo JC, Gao G. (2015) GSDS 2.0: an upgraded gene feature visualization server. Bioinformatics., 31: 1296-1297.

43.

Liu Y, Yang YF, Fan JL, He RN, Luo M,Zheng XF. (2015) The Crystal structure of the PB2 Cap-binding domain of influenza B virus reveals a novel cap recognition mechanism. J Biol Chem., 290: 9141-9149.

44.

Peng JY, Zhou YX, Zhu SY, Wei WS. (2015) High-throughput screens in mammalian cells using the CRISPR-Cas9 system. FEBS J., 282: 2089-2096.

45.

Bai SN. (2015) The concept of the sexual reproduction cycle and its evolutionary significance. Front Plant Sci., 6: 11.

46.

Wang XC, Li Q, Jin X, Xiao GH, Liu GJ, Liu NJ, Qin YM. (2015) Quantitative proteomics and transcriptomics reveal key metabolic processes associated with cotton fiber initiation.J Proteomics., 114: 16-27.

47.

Shen HY, An MR, Zou X, Zhao XY, Wang QS, Xing GW, Ji JG. (2015) Evaluation of the accuracy of protein quantification using isotope TMPP-labeled peptides. Proteomics., 15: 2903-2909.

48.

Zhao Y, Tang L, Li Z, Jin JP, Luo JC, Gao G. (2015) Identification and analysis of unitary loss of long-established protein-coding genes in Poaceae shows evidences for biased gene loss and putatively functional transcription of relics. BMC Evol Biol., 15: 66.

49.

Li CN, Ng CKY, Fan LM. (2015) MYB transcription factors, active players in abiotic stress signaling. Environ. Exp. Bot., 114: 80-91.

50.

Li CN, Zhou YY, Fan LM. (2015) A novel repressor of floral transition, MEE3, an abiotic stress regulated protein, functions as an activator of FLC by binding to its promoter in Arabidopsis. Environ. Exp. Bot., 113: 1-10.

51.

Liu Q, Shen GZ, Peng KQ, Huang ZG, Tong JH, Kabir MH, Wang JH, Zhang JZ, Qin GJ, Xiao LT. (2015) The alteration in the architecture of a T-DNA insertion rice mutant osmtd1 is caused by up-regulation of MicroRNA156f. J Integr Plant Biol., 57: 819-829.

52.

Huang QP, Dresselhaus T, Gu HY, Qu LJ. (2015) Active role of small peptides in Arabidopsis reproduction: Expression evidence. J Integr Plant Biol., 57: 518-521.

53.

Yang M, Wang X, Huang H, Ren D, Su Y, Zhu P, Zhu D, Fan L, Chen L, He G, Deng XW. (2015) Natural variation of H3K27me3 modification in two Arabidopsis accessions and their hybrid. J Integr Plant Biol., DOI:10.1111/jipb.12443.

54.

Li M, An F, Li W, Ma M, Feng Y, Zhang X, Guo HW (2015) DELLA proteins interact with FLC to repress the flowering transition. J Integr Plant Biol., DOI:10.1111/jipb.12451.

55.

Yang Y, Li L, Qu LJ. (2015)Plant Mediator complex and its critical functions in transcription regulation. J Integr Plant Biol.,doi: 10.1111/jipb.12377.

56.

Song JH, Zhu CX, Zhang X, Wen X, Liu LL, Peng JY,Guo HW, Yi CQ. (2015) Biochemical and structural insights into the mechanism of DNA recognition by Arabidopsis ETHYLENE INSENSITIVE3. PLoS One., 10: e0137439.

57.

Zou Z, Fu XM. (2015) Abiotic regulation: A common way for proteins to modulate their functions. Curr Protein Pept Sci., 16: 188-195.

58.

Su XD, Zhang H, Terwilliger TC, Liljas A, Xiao JY, Dong YH. (2015) Protein crystallography from the perspective of technology developments.Crystallogr Rev., 21: 122-153.

59.

Fu XM, Tang Y, Dickinson BC, Chang CJ, Chang ZY. (2015) An oxidative fluctuation hypothesis of aging generated by imaging H₂O₂ levels in live Caenorhabditiselegans with altered lifespans. BiochemBiophys Res Commun., 458: 896-900.

60.

Dai JH, Qu H, Yu ZS, Yang JK, Zhang HX. (2015) Computational analysis of AnmK-like kinase: new insights into the cell wall metabolism of fungi.J Theor Biol., 379: 59-65.

61.

Li XY, Ma SQ, Yi CQ.(2015)Pseudouridinechemicallabelling

andprofiling. Methods Enzymol,560: 247-272.

62.

Zhen G, Zhang L, Du Y, Yu R, Liu X, Cao F, Chang Q, Deng XW, Xia M, He H. (2015) De novo assembly and comparative analysis of root transcriptomes from different varieties of Panax ginseng C. A. Meyer grown in different environments. Sci China Life Sci.,58: 1099-1110.

63.

Chen XY, Zhao M,Qu H. (2015) Cellular metabolic network analysis: discovering important reactions in treponemapallidum. Biomed Res Int.,2015: 328568.

64.

Zhao M, Chen YM, Qu DC,Qu H. (2015) METSP: a maximum-entropy classifier based text mining tool for transporter-substrate identification with semistructured text. Biomed Res Int.,2015: 254838.

65.

Zhao C, Li ZK, Li T, Zhang YJ, Bryant DA, Zhao JD.(2015) High-yield production of extracellular type-I cellulose by the cyanobacteriumSynechococcus sp. PCC 7002. Cell Discovery, 1: 15004.

66.

Dong J, Terzaghi W, Deng XW, Chen HD. (2015) Multiple photomorphogenic repressors work in concert to regulate Arabidopsis seedling development. Plant Signal Behav., 10: e1011934.

67.

68.

Li X, Gao S, Tang Y, Li L, Zhang F, Feng B, Fang Z, Ma L, Zhao C. (2015) Genome-wide identification and evolutionary analyses of bZIP transcription factors in wheat and its relatives and expression profiles of anther development related TabZIP genes. BMC Genomics, 16: 976.

69.

Meng Y, Li H, Hua R, Wang H, Lu J, Yu X, Zhang C. (2015) A correlativity study of plasma APL1β28 and clusterin levels with MMSE/MoCA/CASI in aMCI patients. Sci Rep., 5:15546.

70.

Karijolich J, Yi CQ, Yu YT. (2015) Transcriptome-widedynamicsofRNA pseudouridylation.Nat Rev Mol Cell Biol.,16: 581-585.

71.

Yang Y, Darbari VC, Zhang N, Lu D, Glyde R, Wang YP, Winkelman JT, Gourse RL, Murakami KS, Buck M, Zhang X. (2015) Structures of the RNA polymerase-σ54 reveal new and conserved regulatory strategies. Science., 349: 882-885.

72.

Jiao S, Zhang Z, Li C, et al. (2015) The kinase MST4 limits inflammatory responses through direct phosphorylation of the adaptor molecule TRAF6. Nat Immunol.,16: 246-257.

73.

Li Y, Duan CG, Zhu X, Qian WQ, Zhu JK. (2015) A DNA ligase required for active DNA demethylation and genomic imprinting in Arabidopsis. Cell Res, 25: 757-760.

74.

Basan M, Zhu M, Dai X, Warren M, Sévin D, Wang YP, Hwa T. (2015) Inflating bacterial cells by increased protein synthesis. MolSyst Biol., 11: 836.

75.

Yang K, Wang C, Nie L, Zhao X, Gu J, Guan X, Wang S, Xiao T, Xu X, He T, Xia X, Wang J, Zhao J. (2015) Klotho Protects Against IndoxylSulphate-Induced Myocardial Hypertrophy.J Am SocNephrol., 26: 2434-2446.

76.

Zhao Y, Zhao MM, Cai Y, Zheng MF, Sun WL, Zhang SY, Kong W,Gu J, Wang X, Xu MJ. (2015) Mammalian target of rapamycin signaling inhibition ameliorates vascular calcification via Klothoupregulation.Kidney Int., 88: 711-721.

77.

Li Y, Córdoba-Cañero D, Qian WQ, Zhu X, Tang K, Zhang H, Ariza RR, Roldán-Arjorna T, Zhu JK. (2015) An AP endonuclease functions in active DNA dimethylation and gene imprinting in Arabidopsis.PLoS Genet., 11: e1004905.

78.

79.

Liu M, Qu H, Bu Z, Chen D, Jiang B, Cui M, Xing J, Yang H, Wang Z, Di J, Chen L, Zhang C, Yao Z, Zhang N, Tan F, Gu J, Li Z, Su X. (2015) Validation of the memorial sloan-kettering cancer center nomogram to predict overall survival. Ann SurgOncol., 22: 3881-3887.

80.

Tagliabracci VS, Wiley SE, Guo X, Kinch LN, Durrant E, Wen J, Xiao JY, Cui J, Nguyen KB, Engel JL, Coon JJ, Grishin N, Pinna LA, Pagliarini DJ, and Dixon JE. (2015) A single kinase generates the majority of the secreted phosphoproteome. Cell, 161, 1619-1632.

81.

Cui J, Xiao JY, Tagliabracci VS, Wen J, Rahdar M, Dixon JE (2015) A secretory kinase complex regulates extracellular protein phosphorylation. eLife, 4: e06120.

82.

Yu F, Lu J, Liu X, et al. (2015) Population genomic analysis of 962 whole genome sequences of humans reveals natural selection in non-coding regions.PLoS One.,10: e0121644.

83.

84.

85.

Gu C, Zhang J, Yang YI, Chen X, Ge H, Sun Y, Su XD, Yang L, Xie S, Gao YQ. (2015) DNA Structural Correlation in Short and Long Ranges. J PhysChem B., 119: 13980-13990.

86.

Chen HM, Yu K, Tang XY, Bao ZS, Jiang T, Fan XL, Chen XW, Su XD. (2015) Enhanced expression and phosphorylation of the MET oncoprotein by glioma-specific PTPRZ1-MET fusions.FEBS Lett., 589: 1437-1443.

87.

Guan K, Wei CW, Zheng ZR, Song T, Wu FX, Zhang YH, Cao Y, Ma SL, Chen W, Xu QB, Xia WW, Gu J, He X, Zhong H. (2015) MAVS promotes inflammasome activation by targeting ASC for K63-linked ubiquitination via the E3 ligase TRAF3. J Immunol., 194: 4880-4890.

88.

Shen J, Cai CZ, Yu ZL, Pang YH, Zhou Y, Qian LL, Wei WS, Huang YY. (2015) A microfluidic live cell assay to study anthrax toxin induced cell lethality assisted by conditioned medium. Sci Rep., 5: 8651.

89.

Yang C, Lin FB, Li Q, Li T, Zhao JD. (2015) Comparative genomics reveals diversified CRISPR-Cas systems of globally distributed Microcystisaeruginosa, a freshwater bloom-forming cyanobacterium. Front Microbiol., 6: 394.