序号

论文信息

1.

Xu, DY; Shen, WP; Guo, R; Xue, YT; Peng, W; Sima, J; Yang, J; Sharov, A; Srikantan, S; Yang, JD; Fox, D; Qian, Y; Martindale, JL; Piao, YL; Machamer, J; Joshi, SR; Mohanty, S; Shaw, AC; Lloyd, TE; Brown, GW; Ko, MSH; Gorospe, M; Zou, SG; Wang, WD (2013) Top3 beta is an RNA topoisomerase that works with fragile X syndrome protein to promote synapse formation. Nat. Neurosci., 16 (9): 1238-1249.

2.

Escribano-Diaz, C; Orthwein, A; Fradet-Turcotte, A; Xing, MT; Young, JTF; Tkac, J; Cook, MA; Rosebrock, AP; Munro, M; Canny, MD; Xu, DY; Durocher, D (2013) A Cell Cycle-Dependent Regulatory Circuit Composed of 53BP1-RIF1 and BRCA1-CtIP Controls DNA Repair Pathway Choice. Mol. Cell, 49 (5): 872-883.

3.

Huang, X; Ouyang, XH; Yang, PY; Lau, OS; Chen, LB; Wei, N; Deng, XW (2013) Conversion from CUL4-based COP1-SPA E3 apparatus to UVR8-COP1-SPA complexes underlies a distinct biochemical function of COP1 under UV-B. Proc. Natl. Acad. Sci. U. S. A., 110 (41): 16669-16674.

4.

Liu, JJ; Zhong, S; Guo, XY; Hao, LH; Wei, XL; Huang, QP; Hou, YN; Shi, J; Wang, CY; Gu, HY; Qu, LJ (2013) Membrane-Bound RLCKs LIP1 and LIP2 Are Essential Male Factors Controlling Male-Female Attraction in Arabidopsis. Curr. Biol., 23 (11): 993-998.

5.

Yi, CQ; He, C (2013) DNA Repair by Reversal of DNA Damage. ColdSpringHarbor Perspect. Biol., 5:a012575.

6.

Miao, J; Guo, DS; Zhang, JZ; Huang, QP; Qin, GJ; Zhang, X; Wan, JM; Gu, HY; Qu, LJ (2013) Targeted mutagenesis in rice using CRISPR-Cas system. Cell Res., 23 (10): 1233-1236.

7.

Wang, ZX; Wu, YL; Li, LF; Su, XD (2013) Intermolecular recognition revealed by the complex structure of human CLOCK-BMAL1 basic helix-loop-helix domains with E-box DNA. Cell Res., 23 (2): 213-224.

8.

Liu, C; Li, LC; Chen, WQ; Chen, X; Xu, ZH; Bai, SN (2013) HDA18 Affects Cell Fate in Arabidopsis Root Epidermis via Histone Acetylation at Four Kinase Genes. Plant Cell, 25 (1): 257-269.

9.

Huang, X; Ouyang, XH; Yang, PY; Lau, OS; Li, G; Li, JG; Chen, HD; Deng, XW (2013) Arabidopsis FHY3 and HY5 Positively Mediate Induction of COP1 Transcription in Response to Photomorphogenic UV-B Light. Plant Cell, 24 (11): 4590-4606.

10.

Li, ZH; Peng, JY; Wen, X; Guo, HW (2013) ETHYLENE-INSENSITIVE3 Is a Senescence-Associated Gene That Accelerates Age-Dependent Leaf Senescence by Directly Repressing miR164 Transcription in Arabidopsis. Plant Cell, 25 (9): 3311-3328.

11.

Tao, Q; Guo, DS; Wei, BY; Zhang, F; Pang, CX; Jiang, H; Zhang, JZ; Wei, T; Gu, HY; Qu, LJ; Qin, GJ (2013) The TIE1 Transcriptional Repressor Links TCP Transcription Factors with TOPLESS/TOPLESS-RELATED Corepressors and Modulates Leaf Development in Arabidopsis. Plant Cell, 25 (2): 421-437.

12.

Chen, HD; He, H; Zhou, FS; Yu, HH; Deng, XW (2013) Development of genomics-based genotyping platforms and their applications in rice breeding. Curr. Opin. Plant Biol., 16 (2): 247-254.

13.

He, GM; Chen, BB; Wang, XC; Li, XY; Li, JG; He, H; Yang, M; Lu, L; Qi, YJ; Wang, XP; Deng, XW (2013) Conservation and divergence of transcriptomic and epigenomic variation in maize hybrids. Genome Biol., 14 (6): R57.

14.

Bai DM, Zhang J, Xiao WC, Zheng XF (2013) Regulation of the HDM2-p53 pathway by ribosomal protein L6 in response to ribosomal stress. Nucleic Acid Res., doi: 10.1093/nar/gkt971.

15.

Ma Yh, Bao JT, Zhao XY, Shen HY, Lv JN, Ma SP, Zhang XF, Li ZY, Wang SX, Wang QS, Ji JG. (2013) Activated Cyclin-Dependent Kinase 5 Promotes Microglial Phagocytosis of Fibrillar β-Amyloid by Up-regulating Lipoprotein Lipase Expression. Molecular & Cellular Proteomics, 12(10): 2833-2844.

16.

Wang, J; Kong, L; Gao, G; Luo, JC (2013) A brief introduction to web-based genome browsers. Brief. Bioinform., 14: 131-143.

17.

Luo J (2013) Teaching the ABCs of Bioinformatics: a brief introduction to the Applied Bioinformatics Course. Brief Bioinform., doi: 10.1093/bib/bbt065).

18.

Kang, JQ; Zhang, HT; Sun, TS; Shi, YH; Wang, JQ; Zhang, BC; Wang, ZH; Zhou, YH; Gu, HY (2013) Natural variation of C-repeat-binding factor (CBFs) genes is a major cause of divergence in freezing tolerance among a group of Arabidopsis thaliana populations along the Yangtze River in China. New Phytol., 199 (4): 1069-1080.

19.

Chen, H., Xie, W., He, H., Yu, H., Chen, W., Li, J., Yu, R., Yao, Y., Zhang, W., He, Y., Tang, X., Zhou, F., Deng, XW, and Zhang, Q (2013) A High-Density SNP Genotyping Array for Rice Biology and Molecular Breeding. Mol Plant., doi:10.1093/mp/sst135.

20.

Liu, TT; Zhu, DM; Chen, W; Deng, W; He, H; He, GM; Bai, BY; Qi, YJ; Chen, RS; Deng, XW (2013) A Global Identification and Analysis of Small Nucleolar RNAs and Possible Intermediate-Sized Non-Coding RNAs in Oryza sativa. Mol. Plant., 6 (3): 830-846.

21.

Ji, YS; Guo, HW (2013) From Endoplasmic Reticulum (ER) to Nucleus: EIN2 Bridges the Gap in Ethylene Signaling. Mol. Plant., 6 (1): 11-14.

22.

Zhang, XY; Chen, YT; Lin, X; Hong, XY; Zhu, Y; Li, WY; He, WR; An, FY; Guo, HW (2013) Adenine Phosphoribosyl Transferase 1 is a Key Enzyme Catalyzing Cytokinin Conversion from Nucleobases to Nucleotides in Arabidopsis. Mol. Plant., 6 (5): 1661-1672.

23.

An, MR; Zou, X; Wang, QS; Zhao, XY; Wu, J; Xu, LM; Shen, HY; Xiao, XY; He, DC; Ji, JG (2013) High-Confidence de Novo Peptide Sequencing Using Positive Charge Derivatization and Tandem MS Spectra Merging. Anal. Chem., 85 (9): 4530-4537.

24.

Lai, WJ; Wu, J; Zou, X; Xie, J; Zhang, LW; Zhao, XY; Zhao, MZ; Wang, QS; Ji, JG (2013) Secretome Analyses of A beta(1-42) Stimulated Hippocampal Astrocytes Reveal that CXCL10 is Involved in Astrocyte Migration. J. Proteome Res., 12 (2): 832-843.

25.

Zhao, XY; Wang, QS; Wang, SX; Zou, X; An, MR; Zhang, XF; Ji, JG (2013) Citric Acid-Assisted Two-Step Enrichment with TiO2 Enhances the Separation of Multi- and Monophosphorylated Peptides and Increases Phosphoprotein Profiling. J. Proteome Res., 12 (6): 2467-2476.

26.

Fu, XM; Shi, XD; Yin, LX; Liu, JF; Joo, K; Lee, J; Chang, ZY (2013) Small Heat Shock Protein IbpB Acts as a Robust Chaperone in Living Cells by Hierarchically Activating Its Multi-type Substrate-binding Residues. J. Biol. Chem., 288 (17): 11897-11906.

27.

Fu X*, Shi X, Yan L, Zhang H,Chang Z (2013) In vivo substrate diversity and preference of small heat shock protein IbpB as revealed by using a genetically incorporated photo-crosslinker. J. Biol. Chem., 288(44):31646-54.

28.

Zhang, H; Zhang, H; Gao, ZQ; Wang, WJ; Liu, GF; Xu, JH; Su, XD; Dong, YH (2013) Structure of the Type VI Effector-Immunity Complex (Tae4-Tai4) Provides Novel Insights into the Inhibition Mechanism of the Effector by Its Immunity Protein. J. Biol. Chem. , 288 (8): 5928-5939.

29.

Liu, Y; Qin, K; Meng, G; Zhang, JF; Zhou, JF; Zhao, GY; Luo, M; Zheng, XF (2013) Structural and Functional Characterization of K339T Substitution Identified in the PB2 Subunit Cap-binding Pocket of Influenza A Virus. J. Biol. Chem., 288 (16): 11013-11023.

30.

Seo, JK; Wu, JG; Lii, YF; Li, Y; Jin, HL (2013) Contribution of Small RNA Pathway Components in Plant Immunity. Mol. Plant-Microbe Interact., 26 (6): 617-625.

31.

Tang X, Hou M, Ding Y, Li Z, Ren L, Gao G*.(2013) Systematically profiling and annotating long intergenic non-coding RNAs in human embryonic stem cell. BMC Genomics14(Suppl 5): S3.

32.

Cui, WY; Zhao, SF; Polanowska-Grabowska, R; Wang, J; Wei, JX; Dash, B; Chang, SL; Saucerman, JJ; Gu, J; Li, MD (2013) Identification and Characterization of Poly(I:C)-induced Molecular Responses Attenuated by Nicotine in Mouse Macrophages. Mol. Pharmacol., 83 (1): 61-72.

33.

Wei, T; Ou, B; Li, JB; Zhao, Y; Guo, DS; Zhu, YY; Chen, ZL; Gu, HY; Li, CY; Qin, GJ; Qu, LJ (2013) Transcriptional Profiling of Rice Early Response to Magnaporthe oryzae Identified OsWRKYs as Important Regulators in Rice Blast Resistance. PLoS One, 8(3): e59720.

34.

Chen, DL; Jiang, BH; Xing, JD; Liu, MX; Cui, M; Liu, YQ; Wang, ZZ; Chen, L; Yang, H; Zhang, CH; Yao, ZD; Zhang, N; Ji, JF; Qu, H; Su, XQ (2013) Validation of the Memorial Sloan-Kettering Cancer Center Nomogram to Predict Disease-Specific Survival after R0 Resection in a Chinese Gastric Cancer Population. PLoS One, 8 (10): e76041.

35.

Wang, X; Yang, JG; Chen, L; Wang, JL; Cheng, Q; Dixon, R; Wang, YP (2013) Using Synthetic Biology to Distinguish and Overcome Regulatory and Functional Barriers Related to Nitrogen Fixation. PLoS One, 8 (7): e68677.

36.

Huang, Y; Xie, C; Ye, AY; Li, CY; Gao, G; Wei, LP (2013) Recent Adaptive Events in Human Brain Revealed by Meta-Analysis of Positively Selected Genes. PLoS One, 8: e61280.

37.

Yang, JJ; Yuan, PF; Wen, DQ; Sheng, Y; Zhu, SY; Yu, YZ; Gao, X; Wei, WS (2013) ULtiMATE System for Rapid Assembly of Customized TAL Effectors. PLoS One, 8 (9).

38.

Xiao, WC; Peng, YY; Liu, Y; Li, Z; Li, SL; Zheng, XF (2013) HSCARG Inhibits NADPH Oxidase Activity through Regulation of the Expression of p47phox. PLoS One, 8: e59301.

39.

Jin, X; Pang, Y; Jia, FX; Xiao, GH; Li, Q; Zhu, YX (2013) A Potential Role for CHH DNA Methylation in Cotton Fiber Growth Patterns. PLoS One, 8: e60547.

40.

Kong, L; Cheng, L; Fan, LY; Zhao, M; Qu, H (2013) IQdb: an intelligence quotient score-associated gene resource for human intelligence. Database, bat063.

41.

Chen Y, Chen, ZL, Kang JQ, Kang DM, Gu HY, Qin GJ (2013) AtMYB14 Regulates Cold Tolerance in Arabidopsis. Plant Mol. Biol. Rep., 31 (1): 87-97.

42.

Fan, M; Kang, DM; Guan, H; Chen, ZL; Qu, LJ (2013) A new protein kinase gene SSG1 is essential for adaptation of Arabidopsis to salt stress. Environ. Exp. Bot., 86: 9-16.

43.

Kong, YF; Chen, SB; Yang, Y; An, CC (2013) ABA-insensitive (ABI) 4 and ABI5 synergistically regulate DGAT1 expression in Arabidopsis seedlings under stress. FEBS Lett., 587 (18): 3076-3082.

44.

Li, J., Yang, L., Jin, D., Nezames, C.D., Terzaghi, W., and Deng, X.W (2013) UV-B-induced photomorphogenesis in Arabidopsis. Protein Cell, 4: 485-492

45.

Bai, XY; Zheng, XF (2013) Tip-to-tip interaction in the crystal packing of PACSIN 2 is important in regulating tubulation activity. Protein Cell, 4 (9): 695-701.

46.

Meng G, An X, Ye, S, Liu Y, Zhu W, Zhang R, Zheng XF (2013) ThecrystalstructureofLidA,atranslocatedsubstrateofthe LegionellapneumophilaTypeIVsecretionsystem, reveals a novel folding. Protein & Cell, 4(12):897-900.

47.

Wang Z, Li L, Su XD (2013) Structural and functional characterization of a novel α/β hydrolase from cariogenic pathogen Streptococcus mutans. Proteins., doi: 10.1002/prot.24418.

48.

Feng, X; Yang, RN; Zheng, XF; Zhang, FY (2013) Identification of a novel nuclear-localized adenylate kinase 6 from Arabidopsis thaliana as an essential stem growth factor. Plant Physiol. Biochem., 61): 180-186.

49.

FuLW, YuXC, AnCC (2013) Overexpression of constitutively active OsCPK10 increases Arabidopsis resistance against Pseudomonas syringae pv. tomato and rice resistance against Magnaporthe grisea. Plant Physiology and Biochemistry, 73: 202-210.

50.

Fu X*, Chang Z, Shi X, Bu D, Wang C (2013) Multilevel structural characteristics for the natural substrate proteins of bacterial small heat shock proteins. Protein Sci., doi: 10.1002/pro.2404.

51.

Wang, YB; Hou, YN; Gu, HY; Kang, DM; Chen, ZL; Liu, JJ; Qu, LJ (2013) The Arabidopsis Anaphase-Promoting Complex/Cyclosome Subunit 1 is Critical for Both Female Gametogenesis and Embryogenesis. J. Integr. Plant Biol., 55 (1;SI SI): 64-74.

52.

Jin, X; Li, Q; Xiao, GH; Zhu, YX (2013) Using Genome-Referenced Expressed Sequence Tag Assembly to Analyze the Origin and Expression Patterns of Gossypium hirsutum Transcripts. J. Integr. Plant Biol., 55 (7): 576-585.

53.

He, GM; He, H; Deng, XW (2013) Epigenetic Variations in Plant Hybrids and Their Potential Roles in Heterosis. J. Genet. Genomics, 40 (5): 205-210.

54.

Fu LW, Yu XC, An CC (2013) OsCPK20 positively regulates Arabidopsis resistance against Pseudomonas syringae pv. tomato and rice resistance against Magnaporthe grisea. Acta Physiol Plant, DOI 10.1007/s11738-013-1408-5.

55.

Tan, ZJ; Hu, YL; Lin, ZP (2013) Expression of SYMRK affects the development of arbuscular mycorrhiza in tobacco roots. Acta Physiol. Plant., 35 (1): 85-94.

56.

Liu, Y; Meng, G; Luo, M; Zheng, XF (2013) Crystallization and X-ray crystallographic analysis of the cap-binding domain of influenza A virus H1N1 polymerase subunit PB2. Acta Crystallogr. F-Struct. Biol. Cryst. Commun., 69): 280-283.

57.

Ma, M; Ye, AY; Zheng, WG; Kong, L (2013) A Guide RNA Sequence Design Platform for the CRISPR/Cas9 System for Model Organism Genomes. Biomed Res. Int., 270805.

58.

Zhao, M; Li, XM; Qu, H (2013) EDdb: A web resource for eating disorder and its application to identify an extended adipocytokine signaling pathway related to eating disorder. Sci. China-Life Sci., 56 (12): 1086-1096.

59.

Huang, X., and Deng, X.W. (2013) Organization of protein complexes under photomorphogenic UV-B in Arabidopsis. Plant Signal Behav., doi:10.4161/psb.27206.

60.

Zhao, MZ; Wang, QS; Lai, WJ; Zhao, XY; Shen, HY; Nie, FL; Zheng, YF; Wei, SC; Ji, JG (2013) In vitro bioactivity and biocompatibility evaluation of bulk nanostructured titanium in osteoblast-like cells by quantitative proteomic analysis. J. Mat. Chem. B, 1 (14): 1926-1938.

61.

Shu J, Wu C, Wu Y, Li Z, Shao S, Zhao W, Tang X, Yang H, Shen L, Zuo X, Yang W, Shi Y, Chi X, Zhang H, Gao G, et al.(2013) Induction of pluripotency in mouse somatic cells with lineage specifiers.Cell,153(5): 963-975.

62.

Li H., Xu T., Lin D., Wen M., Xie M., Duclercq J., Bielach A., Kim J., Reddy GV., Zuo J., Benková E., Friml J., Guo H. and Yang Z (2013) Cytokinin signaling regulates pavement cell morphogenesis in Arabidopsis. Cell Res., 23:290-299.

63.

Song S., Qi T., Fan M., Zhang X., Gao H., Huang H., Wu D., Guo H. and Xie D (2013) The bHLH Subgroup IIId Factors Negatively Regulate Jasmonate-Mediated Plant Defense and Development. PLoS Genet, 9(7): e1003653.

64.

Zheng D., Han X., An Y., Guo H., Xia X. and Yin W (2013) The nitrate transporter NRT2.1 functions in the ethylene response to nitrate deficiency in Arabidopsis. Plant Cell Environ, 36: 1328–1337.

65.

Dong C, Zhang H, Gao ZQ, Wang WJ, She Z, Liu GF, Shen YQ, Su XD, Dong YH (2013) Structural insights into the inhibition of type VI effector Tae3 by its immunity protein Tai3. Biochem J, 454(1):59-68.

66.

Chen, W., Chen, H., Zheng, T., Yu, R., Terzaghi, W.B., Li, Z., Deng, X.W., Xu, J., and He, H (2013) Highly efficient genotyping of rice biparental populations by GoldenGate assays based on parental resequencing. Theor Appl Genet, doi: 10.1007/s00122-013-2218-2.

67.

You, C., Okano, H., Hui, S., Zhang, Z., Kim, M., Gunderson, C.W., Wang, Y.P., Lenz, P., Yan, D., and Hwa, T (2013) Coordination of bacterial proteome with metabolism by cAMP signaling. Nature, 500: 301-306.

68.

Kim, S; Brostromer, E; Xing, D; Jin, JS; Chong, SS; Ge, H; Wang, SY; Gu, C; Yang, LJ; Gao, YQ; Su, XD; Sun, YJ; Xie, XS (2013) Probing Allostery Through DNA. Science, 339 (6121): 816-819.

69.

Shi, H; Zhong, SW; Mo, XR; Liu, N; Nezames, CD; Deng, XW (2013) HFR1 Sequesters PIF1 to Govern the Transcriptional Network Underlying Light-Initiated Seed Germination in Arabidopsis. Plant Cell, 25 (10): 3770-3784.

70.

Zhou H, Yu M, Fukuda K, Im J, Yao P, Cui W, Bulek K, Zepp J, Wan Y, Whan Kim T, Yin W, Ma V, Thomas J, Gu J, Wang JA, Dicorleto PE, Fox PL, Qin J, Li X (2013) IRAK-M mediates Toll-like receptor/IL-1R-induced NFκB activation and cytokine production. EMBO J., 20;32(4):583-96.

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Luo, JC; Nijveen, H; Attwood, T; Judge, D; Pongor, S; Landsman, D; Bishop, M (2013) Obituary: In memory of Jack Leunissen. Brief. Bioinform., 14 (3): 261-262.

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Wang FG,Chen R,Ji D,Bai SN,Qian MP, Deng MH (2013) Adjustment method for microarray data using two-cycle RNA labeling protocol. BMC Genomics, 14:31.

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Zeng Y, Chen H, Shi X, Yin Z, Yang Z, Gu J, Blazer D (2013) Health Consequences of Familial Longevity Influence Among the Chinese Elderly. J Gerontol A Biol Sci Med Sci., 68(4):473-82.

74.

Chen, HH; Jiang, ZF (2013) The essential adaptors of innate immune signaling. Protein Cell, 4 (1): 27-39.

75.

Zhu, YX; Li, FG (2013) The Gossypium raimondii Genome, a Huge Leap Forward in Cotton Genomics. J. Integr. Plant Biol., 55 (7): 570-571.

76.

Li X, Fang YH, Yang J, Bai SN, Rao GY (2013) Overview of the morphology, anatomy, and ontogeny of Adiantum capillus-veneris: An experimental system to study the development of ferns. J Syst. Evol., 51(5): 499-510.