2019Publications

No.

Paper Information

1.

Zhong S, Liu ML, Wang ZJ, Huang QP, Hou SY, Xu YC, Ge ZX, Song ZH, Huang JY, Qiu XY, Shi YH, Xiao JY, Liu P, Guo YL, Dong J, Dresselhaus T, Gu HY,Qu LJ.(2019) Cysteine-rich peptides promote interspecific genetic isolation in Arabidopsis.Science, 364: eaau9564.

2.

Zhao X, Zhang GG, Liu S, Chen XP, Peng RC, Dai LP, Qu X, Li SH, Song H, Gao ZR, Yuan PF, Liu ZH, Li CY, Shang ZF, Li Y, Zhang MF, Qi JX, Wang H, Du N, Wu Y, Bi YH, Gao S, Shi Y, Yan JH, Zhang Y, Xie ZD,Wei WS, Gao GF. (2019) Human neonatal Fc receptor is the cellular uncoating receptor for enterovirus B.Cell, 177: 1553-1565.

3.

Qu L, Yi ZY, Zhu SY, Wang CH, Cao ZZ, Zhou Z, Yuan PF, Yu Y, Tian F, Liu ZH, Bao Y, Zhao YX,Wei WS. (2019) Programmable RNA editing by recruiting endogenous ADAR using engineered RNAs.Nat. Biotechnol., 37: 1059-1069.

4.

Sun HX, Zhang ML, Li K, Bai DS,Yi CQ. (2019) Cap-specific, terminal N-6-methylation by a mammalian m(6)Am methyltransferase.Cell Res.,29: 80-82.

5.

Zhang GG, Zhou Z,Wei WS. (2019) In vivo ways to unveil off-targets.Cell Res., 29: 339-340.

6.

Li W, Bai XZ, Li J, Zhao YC, Liu JY, Zhao HY, Liu L, Ding M, Wang QS, Shi FY, Hou M,Ji JG,Gao G, Guo R, Sun YJ, Liu YF,Xu DY. (2019) The nucleoskeleton protein IFFO1 immobilizes broken DNA and suppresses chromosome translocation during tumorigenesis.Nat. Cell Biol., 21: 1273-1285.

7.

Zhang H, Wang YR,Lu J. (2019) Function and evolution of upstream ORFs in eukaryotes.Trends Biochem Sci., 44: 782-794.

8.

Zhu SY, Cao ZZ, Liu ZH, He Y, Wang YA, Yuan PF, Li W, Tian F, Bao Y,Wei WS. (2019) Guide RNAs with embedded barcodes boost CRISPR-pooled screens.Genome Biol., 20: 20.

9.

Zhang XY, Yue D, Wang YN, Zhou YX, Liu Y, Qiu YT, Tian F, Yu Y, Zhou Z, andWei WS. (2019) PASTMUS: mapping functional elements at single amino acid resolution in human cells.Genome Biol.,20: 279.

10.

Ge ZX, Dresselhaus T,Qu LJ. (2019) How CrRLK1L receptor complexes perceive RALF signals.Trends in Plant Sci., 24: 978-981.

11.

Zheng LQ, Li YB, Li XY, Zhong QL, Li NN, Zhang K, Zhang YB, Chu HY, Ma CY, Li GH,Zhao JD, Gao N. (2019) Structural and functional insights into the tetrameric photosystem I from heterocyst-forming cyanobacteria.Nat. Plant., 5: 1087-1097.

12.

Zhou Z,Wei WS. (2019) Interrogating the noncoding genome in a high-throughput fashion.Natl. Sci. Rev., 6: 397-399.

13.

Yuan W, Zhou JC, Tong JJ, Zhuo WQ, Wang LS, Li Y, Sun QW,Qian WQ.(2019) ALBA protein complex reads genic R-loops to maintain genome stability in Arabidopsis.Sci. Adv., 5: eaav9040.

14.

Zhou H, Song Z, Zhong S, Zuo L, Qi Z,Qu LJ, Lai L. (2019) Mechanism of DNA-induced phase separation for transcriptional repressor VRN1.Angew. Chem. Int. Ed., 58: 4858-4862.

15.

Xu RD, Yu SY, Zhu D, Huang XP, Xu YQ, Lao YM, Tian YL, Zhang JF, Tang ZF, Zhang ZM, Yi J, Zhu HH,Zheng XF. (2019) hCINAP regulates the DNA-damage response and mediates the resistance of acute myelocytic leukemia cells to therapy.Nat. Commun., 10: 3812.

16.

Jiang S, Cheng SJ, Ren LC, Wang Q, Kang YJ, Ding Y, Hou M, Yang XX, Lin Y, Liang N,Gao G. (2019) An expanded landscape of human long noncoding RNA.Nucl. Acids Res., 47: 7842-7856.

17.

Han X, Chang X, Zhang ZH, Chen HD,He H, Zhong BJ,Deng XW. (2019) Origin and evolution of core components responsible for monitoring light environment changes during plant terrestrialization.Mol.Plant., 12: 847-862.

18.

Yao SZ, Yang ZR, Yang RX, Huang Y, Guo G, Kong XY, Lan Y, Zhou T, Wang H, Wang WM, Cao XF, Wu JG,Li Y. (2019) Transcriptional regulation of miR528 by OsSPL9 orchestrates antiviral response in rice.Mol.Plant., 12: 1114-1122.

19.

Yu XD, Dong J, Deng ZG, Jiang YP, Wu C, Qin XF, Terzaghi W, Chen HD, Dai MQ,Deng XW. (2019) Arabidopsis PP6 phosphatases dephosphorylate PIF proteins to repress photomorphogenesis.Proc. Natl. Acad. Sci. U. S. A., 116: 20218-20225.

20.

Wang LH, Cheng MZ, Yang Q, Li JG, Wang X, Zhou Q, Nagawa S, Xia BX, Xu TD, Huang RF, He JF, Li CJ, Fu Y, Liu Y, Bao JC, Wei HY, Li H, Tan L, Gu ZH, Xia A, Huang XH, Yang ZB,Deng XW. (2019) Arabinogalactan protein-rare earth element complexes activate plant endocytosis.Proc. Natl. Acad. Sci. U. S. A., 116: 14349-14357.

21.

Heng Y, Jiang Y, Zhao X, Zhou H, Wang X,Deng XW, Xu D. (2019) BBX4, a phyB-interacting and modulated regulator, directly interacts with PIF3 to fine tune red light-mediated photomorphogenesis.Proc. Natl. Acad. Sci. U. S. A., 116: 26049-26056.

22.

Feng G, Yuan Y, Li ZY, Wang L, Zhang B, Luo JC, Ji JG,Kong DC. (2019) Replication fork stalling elicits chromatin compaction for the stability of stalling replication forks.Proc. Natl. Acad. Sci. U. S. A.,116: 14563-14572.

23.

Banerjee S, Wei T, Wang J, Lee JJ, Gutierrez HL, Chapman O, Wiley SE, Mayfield JE, Tandon V, Juarez EF, Chavez L, Liang R, Sah RL, Costello C, Mesirov JP, de la Vega L, Cooper KL, Dixon JE,Xiao JY, Lei X. (2019) Inhibition of dual-specificity tyrosine phosphorylation-regulated kinase 2 perturbs 26S proteasome-addicted neoplastic progression.Proc. Natl. Acad. Sci. U. S. A.,116: 24881-24891.

24.

Zang WC, Yang CZ. Li TT, Liao LM,Zheng XF. (2019) Cellular redox sensor HSCARG negatively regulates the translesion synthesis pathway and exacerbates mammary tumorigenesis.Proc. Natl. Acad. Sci. U. S. A., 116: 25624-25633.

25.

Li MN, Cao LJ, Mwimba M, Zhou Y, Li L, Zhou M, Schnable P, O’Rourke J, Dong XN,Wang W. (2019) Comprehensive mapping of abiotic stress inputs into the soybean circadian clock.Proc. Natl. Acad. Sci. U. S. A., 116: 23840-23849.

26.

Chen CT, Feng SL, Zhou M, Ji CH, Que L,Wang W. (2019) Development of a structure-switching aptamer-based nanosensor for salicylic acid detection.Biosens. Bioelectron., 140: 111342.

27.

Ge ZX, Zhao YL, Liu MC, Zhou LZ, Wang LL, Zhong S, Hou SY, Jiang JH, Liu TX, Huang QP, Xiao JY, Gu HY, Wu HM, Dong J, Dresselhaus T, Cheung AY,Qu LJ. (2019) LLG2/3 are co-receptors in BUPS/ANX-RALF signaling to regulate Arabidopsis pollen tube integrity.Curr. Biol., 29: 3256-3265.

28.

Lyu MH, Shi H, Li YL, Kuang KY, Yang ZX, Li J, Chen D, Li Y, Kou XX,Zhong SW. (2019) Oligomerization and photo-deoligomerization of HOOKLESS1 controls plant differential cell growth.Dev.Cell, 51: 78-88.

29.

Zhang QP, Yang XX, Wang JP, Li JR, Wu QX, Wen YX, Zhao Y, Zhang XY, Yao H, Wu XR, Yu SJ,Wei LP, Bao XH. (2019) Genomic mosaicism in the pathogenesis and inheritance of a Rett syndrome cohort.Genet. Med., 21: 1330-1338.

30.

Dong J, Sun N, Yang J, Deng ZG, Lan JQ, Qin GJ, He H, Deng XW, Irish VF,Chen HD, Wei N. (2019) The transcription factors TCP4 and PIF3 antagonistically regulate organ-specific light induction of SAUR genes to modulate cotyledon opening during de-etiolation in Arabidopsis.Plant Cell, 31: 1155-1170.

31.

Zhong S,Qu LJ. (2019) Peptide/receptor-like kinase-mediated signaling involved in male-female interactions.Curr. Opin. Plant Biol., 51: 7-14.

32.

Ren DQ, Wang XC, Yang M, Yang L,He GM,Deng XW. (2019) A new regulator of seed size control in Arabidopsis identified by a genome-wide association study.NewPhytol., 222: 895-906.

33.

Ge ZX, Cheung AY,Qu LJ. (2019) Pollen tube integrity regulation in flowering plants: insights from molecular assemblies on the pollen tube surface.NewPhytol., 222: 687-693.

34.

Ge ZX, Zheng LQ, Zhao YL, Jiang JH, Zhang EJ, Liu TX, Gu HY,Qu LJ. (2019) Engineered xCas9 and SpCas9-NG variants broaden PAM recognition sites to generate mutations in Arabidopsis plants.Plant Biotechnol. J., 17: 1865-1867.

35.

Ji CG, Du S, Li P, Zhu QY, Yang XK, Long CH, Yu J, Shao F,Xiao JY. (2019) Structural mechanism for guanylate-binding proteins (GBPs) targeting by the Shigella E3 ligase IpaH9.8.PLoS Pathog., 15: e1007876.

36.

Heng YQ, Lin F, Jiang Y, Ding MQ, Yan TT, Lan HX, Zhou H, Zhao XH, Xu DQ,Deng XW. (2019) B-box containing proteins BBX30 and BBX31, acting downstream of HY5, negatively regulate photomorphogenesis in Arabidopsis.Plant Physiol., 180: 497-508.

37.

Chen WQ, Drapek C, Li DX, Xu ZH, Benfey PN,Bai SN.(2019) Histone deacetylase HDA19 affects root cortical cell fate by interacting with SCARECROW.Plant Physiol., 180: 276-288.

38.

Liu AJ, Yang XX, Yang XL, Wu QX, Zhang J, Sun D, Yang ZX, Jiang YW, Wu XR,Wei LP, Zhang YH. (2019) Mosaicism and incomplete penetrance of PCDH19 mutations.J. Med. Genet., 56: 81-88.

39.

Wang XC, Yang M, Ren DQ, Terzaghi W,Deng XW,He GM. (2019) Cis-regulated alternative splicing divergence and its potential contribution to environmental responses in Arabidopsis.Plant J., 97: 555-570.

40.

Wang XK, Chen XD, Sun LH,Qian WQ. (2019) Canonical cytosolic iron-sulfur cluster assembly and non-canonical functions of DRE2 in Arabidopsis.PLoS Genet., 15: e1008094.

41.

Zhao BX, Wu QX, Ye AY, Guo J, Zheng XN, Yang XX, Yan LL, Liu QR, Hyde TM,Wei LP, Huang AY. (2019) Somatic LINE-1 retrotransposition in cortical neurons and non-brain tissues of Rett patients and healthy individuals.PLoS Genet., 15: e1008043.

42.

Luo SJ, Liu YC, Xu X. (2019) Tigers of the world: Genomics and conservation.Annu. Rev. Anim. Biosci., 7: 521-548.

43.

Yu JY, Liu Y, Yin HJ,Chang ZY. (2019) Regrowth-delay body as a bacterial subcellular structure marking multidrug-tolerant persisters.Cell Discov., 5: 8.

44.

Zhou WZ, Zhang J, Li ZY, Lin XJ, Li JR, Wang S, Yang CH, Wu QX, Ye AY, Wang M, Wang DD, Pu TZ, Wu YY,Wei LP. (2019) Targeted resequencing of 358 candidate genes for autism spectrum disorder in a Chinese cohort reveals diagnostic potential and genotype-phenotype correlations.Hum. Mutat., 40: 801-815.

45.

Zhang S, Chen S, Ma J, Wang Y,Chang ZY, Fu XM (2019) DegP degrades a wide range of substrate proteins in Escherichia coli under stress conditions.Biochemical J., 476: 3549-3564.

46.

Yang CZ, Zang WC, Ji YP, Li TT, Yang YF,Zheng XF. (2019) Ribosomal protein L6 (RPL6) is recruited to DNA damage sites in a poly(ADP-ribose) polymerase-dependent manner and regulates the DNA damage response.J. Biol. Chem., 294: 2827-2838.

47.

Yang XL, Yang XX, Chen JY, Li SP, Zeng Q, Huang AY, Ye AY, Yu Z, Wang S, Jiang YW, Wu XR, Wu QX,Wei LP, Zhang YH. (2019) ATP1A3 mosaicism in families with alternating hemiplegia of childhood.Clin. Genet., 96: 43-52.

48.

Wang Y, Qiao R, Wei CH,Li Y. (2019) Rice dwarf virus small RNA profiles in rice and leafhopper reveal distinct patterns in cross-kingdom hosts.Viruses, 11: 847.

49.

Zhang W, Leon-Ricardo BX, van Schooten B, Van Belleghem SM, Counterman BA, McMillan WO, Kronforst MR, Papa R. (2019) Comparative transcriptomics provides insights into reticulate and adaptive evolution of a butterfly radiation.Genome Biol. Evol., 11: 2963-2975.

50.

Zhong S,Qu LJ. (2019) Cysteine-rich peptides: signals for pollen tube guidance, species isolation and beyond.Sci. China Life Sci., 62: 1243-1245.

51.

Chang ZY. (2019) The 2018 Nobel Prize in Chemistry: Engineering proteins (enzymes/peptide/antibodies) towards desired properties via the construction of random libraries.Sci. China Life Sci., 62: 713-724.

52.

Li SQ, Dong ZQ, Yang SS, Feng JX,Li Q. (2019) Chaperoning RPA during DNA metabolism.Curr. Genet., 65: 857-864.

53.

Wu CC,Lu J. (2019) Diversification of transposable elements in arthropods and its impact on genome evolution.Genes,10: 338.

54.

Li XY, Peng JY,Yi CQ. (2019) Acetylation enhances mRNA stability and translation.Biochemistry, 58: 1553-1554.

55.

Wang K,Yi CQ. (2019)Coupling transcription and translation via the epitranscriptomic m(6)A mark.Biochemistry, 58: 297-298.

56.

Hu WE, Zhang X, Guo QF, Yang JW, Yang Y, Wei SC,Su XD. (2019) HeLa-CCL2 cell heterogeneity studied by single-cell DNA and RNA sequencing.PLoS One., 14: e0225466.

57.

Guan JH,Zheng XF. (2019) NEDDylation regulates RAD18 ubiquitination and localization in response to oxidative DNA damage.Biochem. Biophys. Res. Commun., 508: 1240-1244.

58.

Fu XM, Wang Y, Song XW, Shi XD, Shao HQ, Liu Y, Zhang M,Chang ZY. (2019) Subunit interactions as mediated by "non-interface" residues in living cells for multiple homo-oligomeric proteins.Biochem. Biophys. Res. Commun., 512: 100-105.

59.

Chang ZY(2019) Targeting PD-L1 for cancer cell detection.Biochem. Biophys. Res. Commun., 520: 670.

60.

Zhang WP, Xu X, Yue BS, Hou R, Xie JJ, Zou ZT, Han Y, Shen FJ, Zhang L, Xie Z, Yuan YH, Yin YZ, Fu WY, Chen DQ, Huang W, Liu ZY, Tang Y, Zhao B, Zhang Q, Chen W, Zhang RY, Chen J,Luo SJ, Zhang ZH. (2019) Sorting out the genetic background of the last surviving South China tigers.J. Hered.,110: 641-650.

61.

Zeng H, He B,Yi CQ. (2019) Compilation of modern technologies to map genome-wide cytosine modifications in DNA.Chembiochem., 20: 1898-1905.

62.

Wang M,Kong L. (2019) pblat: a multithread blat algorithm speeding up aligning sequences to genomes.BMC Bioinformatics., 20: 28.

63.

Fu XM,Chang ZY. (2019) Biogenesis, quality control, and structural dynamics of proteins as explored in living cells via site-directed photocrosslinking.Protein Sci., 28: 1194-1209.

64.

Wang X,Bai SN. (2019) Key innovations in transition from homospory to heterospory.Plant Signal. Behav., 14: 1596010.

65.

Bai DS,Yi CQ. (2019) Advances in the profiling of single-cell DNA modifications.Small Methods, 3:1900137.

66.

Dou S, Wang Y,Lu J.(2019) Metazoan tsRNAs: Biogenesis, evolution and regulatory functions.Noncoding RNA., 5: 18.

67.

Han X, Yu H, Yuan RR, Yang Y, An FY,Qin GJ. (2019) Arabidopsis transcription factor TCP5 controls plant thermomorphogenesis by positively regulating PIF4 activity.iScience., 15: 611-622.

68.

Yu JY, Liu Y, Yin HJ,Chang ZY. (2019) Regrowth-delay body as a reversible subcellular structure marking dormant bacterial cells.Chinese Journal of Biochemistry and Molecular Biology, 35: 349-352.

69.

Jiang F, Li N, Wang X, Cheng J, Huang Y, Yang Y, Yang J, Cai B,Wang YP, Jin Q, Gao N. (2019) Cryo-EM structure and assembly of an extracellular contractile injection system.Cell, 177: 370-383.

70.

Chen J, Huang Y, Brachi B, Yun Q,Zhang W, Lu W, Li H, Li W, Sun X, Wang G, He J, Zhou Z, Chen K, Ji Y, Shi M, Sun W, Yang Y, Zhang R, Abbott RJ, Sun H. (2019) Genome-wide analysis of Cushion willow provides insights into alpine plant divergence in a biodiversity hotspot.Nat. Commun., 10: 5230.

71.

Xiong L, Xu K, Tian K, Shao Y, Tang L,Gao G, Zhang M, Jiang T, Zhang QC. (2019) SCALE method for single-cell ATAC-seq analysis via latent feature extraction.Nat. Commun.,10: 4576.

72.

Shao Y, Chen C, Shen H, He B Z, Yu D, Jiang S, Zhao S, Gao Z, Zhu Z, Chen X, Fu Y, Chen H,Gao G, Long M, Zhang YE. (2019) GenTree, an integrated resource for analyzing the evolution and function of primate-specific coding genes.Genome Res., 29: 682-696.

73.

Yang J, Lin Y, Huang Y, Jin J, Zou S, Zhang X, Li H, Feng T, Chen J, Zuo Z, Zheng J, Li Y,Gao G, Wu C, Tan W, Lin D. (2019) Genome landscapes of rectal cancer before and after preoperative chemoradiotherapy.Theranostics, 9: 6856-6866.

74.

Ren H, Han J, Yang P, Mao W, Liu X, Qiu L, Qian C, Liu Y, Chen Z, Ouyang X, Chen X,Deng XW, Huang X. (2019) Two E3 ligases antagonistically regulate the UV-B response in Arabidopsis.Proc. Natl. Acad. Sci. U. S. A.,116: 4722-4731.

75.

Lander ES, Baylis F, Zhang F, Charpentier E, Berg P, Bourgain C, Friedrich B, Joung JK, Li JS, Liu D, Naldini L, Nie JB, Qiu RZ, Schoene-Seifert B, Shao F, Terry S,Wei WS, Winnacker EL. (2019) Adopt a moratorium on heritable genome editing.Nature, 567: 165-168.

76.

Zeng H, Mondal M, Song RY, Zhang J, Xia B, Liu MH, Zhu CX, He B, Gao YQ,Yi CQ. (2019) Unnatural cytosine bases recognized as thymines by DNA polymerases by the formation of the Watson-Crick geometry.Angew Chem. Int. Ed. Engl., 58: 130-133.

77.

Gao L, Song Q, Liang H, Zhu Y, Wei T, Dong N,Xiao JY, Shao F, Lai L, Chen X. (2019) Legionella effector SetA as a general O-glucosyltransferase for eukaryotic proteins.Nat. Chem Biol., 15: 213-216.

78.

Kuang Z, Wang Y,Li L, Yang XZ. (2019) miRDeep-P2: accurate and fast analysis of the microRNA transcriptome in plants.Bioinformatics, 35: 2521-2522.

79.

Bai SN. (2019) Plant Morphogenesis 123: a renaissance in modern botany?Sci. China Life Sci., 62: 453-466.